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Immersive Analysis of 3D Multi-Cellular In-Vitro and In-Silico Cell Cultures

Knote, Andreas and Fischer, Sabine and Cussat-Blanc, Sylvain and Niebling, Florian and Bernard, David and Cogoni, Florian and Von Mammen, Sebastian Immersive Analysis of 3D Multi-Cellular In-Vitro and In-Silico Cell Cultures. (2019) In: IEEE International Conference on Artificial Intelligence and Virtual Reality (AIVR 2019), 9 December 2019 - 11 December 2019 (San Diego, CA, United States).

(Document in English)

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Official URL: https://doi.org/10.1109/AIVR46125.2019.00021


Immersive visualization has become affordable for many laboratories and researchers with the advent of consumer virtual reality devices. This paper introduces two according scenarios, (1) modeling biological simulations of multi-cellular tumor spheroids, and (2) analysing spatial features in fluorescence microscopy data of organoids. Based on these, we derive a list of functional requirements for an immersive workbench that integrates both image data analysis and modeling perspectives. Three existing, exploratory prototypes are presented and discussed. Finally, we propose two specific applications of immersive technology for the support of the targeted user groups' research, one for the collaborative definition of segmentation "ground truth", and one for the analysis of spatial features in organoids.

Item Type:Conference or Workshop Item (Paper)
Additional Information:Thanks to IEEE editor. The definitive version is available at http://ieeexplore.ieee.org This papers appears in Proceedings of AIVR 2019. Electronic ISBN: 978-1-7281-5604-0 The original PDF of the article can be found at: https://ieeexplore.ieee.org/document/8942243 Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
HAL Id:hal-02879722
Audience (conference):International conference proceedings
Uncontrolled Keywords:
Institution:French research institutions > Centre National de la Recherche Scientifique - CNRS (FRANCE)
Université de Toulouse > Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE)
Université de Toulouse > Université Toulouse III - Paul Sabatier - UT3 (FRANCE)
Université de Toulouse > Université Toulouse - Jean Jaurès - UT2J (FRANCE)
Université de Toulouse > Université Toulouse 1 Capitole - UT1 (FRANCE)
Other partners > Julius-Maximilians-Universität Würzburg (GERMANY)
Laboratory name:
Deposited On:17 Jun 2020 08:37

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