OATAO - Open Archive Toulouse Archive Ouverte Open Access Week

Deciphering the phylogeny of violets based on multiplexed genetic and metabolomic approaches

Chervin, Justine and Talou, Thierry and Audonnet, Marjorie and Dumas, Bernard and Camborde, Laurent and Esquerré-Tugayé, Marie-Thérèse and Roux, Christophe and Cabanac, Guillaume and Marti, Guillaume Deciphering the phylogeny of violets based on multiplexed genetic and metabolomic approaches. (2019) Phytochemistry, 163. 99-110. ISSN 0031-9422

[img]
Preview
(Document in English)

PDF (Author's version) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader
2MB

Official URL: https://www.sciencedirect.com/science/article/pii/S0031942219300202

Abstract

Molecular phylogenetics based on nucleotide sequence comparisons has profoundly influenced plant taxonomy. A comprehensive chemotaxonomical approach based on GC-MS and UHPLC-HRMS profiling was evaluated for its ability to characterize a large collection of plants all in the violet family Violaceae (n = 111) and thus decipher the taxonomy. A thorough identification of violets is challenging due to their natural hybridization and phenotypic variability. Phylogenetic inference performed on ribosomal internal transcribed spacer sequences using maximum likelihood and neighbor-joining distance methods allowed the clear identification of 58% of the collection. Metabolomic approaches with multivariate data analysis were performed on SPME/GC-MS chromatograms of volatile compounds emitted by fresh mature flowers and on UHPLC-HRMS/MS leaf extracts for non-volatile compounds. Interestingly, molecular and biochemical approaches provided separate classifications while highlighting several common clusters. The profiling of secondary metabolites was proved most suitable for the classification of hundreds of extracts. The combination of phylogenetic and chemotaxonomic approaches, allowed the classification of 96% of the entire collection. A correlation network revealed specific chemotaxonomic biomarkers, in particular flavonoids, coumarins and cyclotides. Overall, our pioneering approach could be useful to solve misclassification issues within collections of close plant species.

Item Type:Article
Additional Information:Thanks to Elsevier editor. The original PDF of the article can be found at Phytochemistry website http://www.sciencedirect.com/science/
HAL Id:hal-02117311
Audience (journal):International peer-reviewed journal
Uncontrolled Keywords:
Institution:French research institutions > Centre National de la Recherche Scientifique - CNRS (FRANCE)
Université de Toulouse > Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE)
French research institutions > Institut National de la Recherche Agronomique - INRA (FRANCE)
French research institutions > Institut de Recherche pour le Développement - IRD (FRANCE)
Université de Toulouse > Université Toulouse III - Paul Sabatier - UT3 (FRANCE)
Université de Toulouse > Université Toulouse - Jean Jaurès - UT2J (FRANCE)
Université de Toulouse > Université Toulouse 1 Capitole - UT1 (FRANCE)
Laboratory name:
Statistics:download
Deposited On:20 Feb 2020 17:34

Repository Staff Only: item control page