OATAO - Open Archive Toulouse Archive Ouverte Open Access Week

Integrating hydrological features and genetically validated occurrence data in occupancy modeling of an endemic and endangered semi-aquatic mammal species, Galemys pyrenaicus, in a Pyrenean catchment

Charbonnel, Anaïs and Buisson, Laetitia and Biffi, Marjorie and D'Amico, Frank and Besnard, Aurélien and Aulagnier, Stéphane and Blanc, Frédéric and Gillet, François and Lacaze, Vincent and Michaux, Johan R. and Némoz, Mélanie and Pagé, Christian and Sanchez-Pérez, José-Miguel and Sauvage, Sabine and Laffaille, Pascal Integrating hydrological features and genetically validated occurrence data in occupancy modeling of an endemic and endangered semi-aquatic mammal species, Galemys pyrenaicus, in a Pyrenean catchment. (2015) Biological Conservation, 184. 182-192. ISSN 0006-3207

(Document in English)

PDF (Author's version) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader

Official URL: http://dx.doi.org/10.1016/j.biocon.2015.01.019


As freshwater habitats are among the most endangered, there is an urgent need to identify critical areas for conservation, especially those that are home to endangered species. The Pyrenean desman (Galemys pyrenaicus) is a semi-aquatic mammal whose basic ecological requirements are largely unknown, hindering adequate conservation planning even though it is considered as a threatened species. Species distribution modelling is challenging for freshwater species. Indeed, the complexity of aquatic ecosystems (e.g., linear and hierarchical ordering) must be taken into account as well as imperfect sampling. High-quality and relevant hydrological descriptors should also be used. To understand the influence of environmental covariates on the occupancy and detection of the Pyrenean desman, we combine both a robust sign-survey data set (i.e. with genetic validation ensuring true presence information) and a hydrological model to simulate the flow regime across a whole catchment. Markovian site-occupancy analysis, taking into account sign detection and based on spatially adjacent replicates, indicated a positive influence of heterogeneity of substrate and shelters, and a negative influence of flow variability on Pyrenean desman detection. This valuable information should help to improve monitoring programs for this endangered species. Our results also highlighted a spatially clustered distribution and a positive influence of stream flow and number of tributaries on occupancy. Hence, modifications of flow regime (e.g. hydropower production, irrigation, climate change) and habitat fragmentation appear to be major threats for this species, altering the connectivity between tributaries and the mainstream river as well as between adjacent sub-catchments.

Item Type:Article
Additional Information:Thanks to Elsevier editor. The definitive version is available at http://www.sciencedirect.com/science/article/pii/S0006320715000403
HAL Id:hal-01494960
Audience (journal):International peer-reviewed journal
Uncontrolled Keywords:
Institution:Other partners > Conservatoire Régional des Espaces Naturels Midi-Pyrénées - CREN (FRANCE)
French research institutions > Centre de Coopération Internationale en Recherche Agronomique - CIRAD (FRANCE)
French research institutions > Centre National de la Recherche Scientifique - CNRS (FRANCE)
Université de Toulouse > Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE)
Other partners > Montpellier SupAgro (FRANCE)
Université de Toulouse > Université Toulouse III - Paul Sabatier - UT3 (FRANCE)
Other partners > Université de Liège (BELGIUM)
Other partners > Université de Montpellier 1 (FRANCE)
Other partners > Université de Montpellier 2 (FRANCE)
Other partners > Ecole Pratique des Hautes Etudes - EPHE (FRANCE)
Other partners > Association des Naturalistes de l'Ariège (FRANCE)
Other partners > Université de Pau et des Pays de l'Adour - UPPA (FRANCE)
Other partners > Université de Montpellier 3 (FRANCE)
Laboratory name:
Deposited On:23 Jul 2015 13:43

Repository Staff Only: item control page